Protein Info for MPMX20_04178 in Enterobacter sp. TBS_079

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 393 transmembrane" amino acids 21 to 40 (20 residues), see Phobius details amino acids 87 to 112 (26 residues), see Phobius details amino acids 126 to 146 (21 residues), see Phobius details amino acids 181 to 200 (20 residues), see Phobius details amino acids 220 to 241 (22 residues), see Phobius details amino acids 256 to 278 (23 residues), see Phobius details amino acids 334 to 353 (20 residues), see Phobius details amino acids 362 to 384 (23 residues), see Phobius details TIGR01726: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family" amino acids 84 to 147 (64 residues), 56.9 bits, see alignment E=1.2e-19 PF00528: BPD_transp_1" amino acids 259 to 388 (130 residues), 60.1 bits, see alignment E=1.3e-20

Best Hits

Swiss-Prot: 86% identical to YHDX_ECOLI: Putative amino-acid ABC transporter permease protein YhdX (yhdX) from Escherichia coli (strain K12)

KEGG orthology group: K09970, general L-amino acid transport system permease protein (inferred from 93% identity to enc:ECL_04653)

Predicted SEED Role

"Glutamate Aspartate transport system permease protein GltJ (TC 3.A.1.3.4)" (TC 3.A.1.3.4)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (393 amino acids)

>MPMX20_04178 hypothetical protein (Enterobacter sp. TBS_079)
MSHRRSAVKGSLSFSHPAVRAWLFQVIAIIAVVLIAVYLIHNTITNLNNRGITSGFAFLD
RSAGFGIVQHLIDYQEGDTYGRVFVVGLLNTLLVSALCIVFASILGFFIGLARLSENWLL
RKLSTFYIETFRNIPPLLQIFFWYFAVLRNLPGPRQAIDALDLFFLSNRGLYIPSPQSGE
GLYAFIAALVIALALSAAMFRYNRKHQFKTGQLRKTWPTAAILIIGLPLLTHWLFGAALH
WDIPQLRGFNFQGGMVLIPELAALTLALSIYTSAFIAEIIRAGIQAVPYGQHEAARSLGL
PHTVTLRQVIIPQALRVIIPPLTSQYLNIVKNSSLAAAIGYPDMVSLFAGTVLNQTGQAI
ETIAITMSVYLIISLVISLLMNLYNRRIALVER