Protein Info for MPMX20_04111 in Enterobacter sp. TBS_079
Annotation: RNase adapter protein RapZ
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 99% identical to RAPZ_CITK8: RNase adapter protein RapZ (rapZ) from Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696)
KEGG orthology group: K06958, UPF0042 nucleotide-binding protein (inferred from 99% identity to eco:b3205)Predicted SEED Role
"Hypothetical ATP-binding protein UPF0042, contains P-loop"
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (284 amino acids)
>MPMX20_04111 RNase adapter protein RapZ (Enterobacter sp. TBS_079) MVLMIVSGRSGSGKSVALRALEDMGFYCVDNLPVVLLPDLARTLAERQISAAVSIDVRNM PESPEIFEQAMSNLPDSFSPQLLFLDADRNTLIRRYSDTRRLHPLSSKNLSLESAIDEES DLLEPLRSRADLIVDTSEMSVHELAEMLRTRLLGKRERELTMVFESFGFKHGIPIDADYV FDVRFLPNPHWDPKLRPMTGLDKPVAAFLDRHTEVHNFIYQTRSYLELWLPMLETNNRSY LTVAIGCTGGKHRSVYIAEQLADYFRSRGKNVQSRHRTLEKRKT