Protein Info for MPMX20_03712 in Enterobacter sp. TBS_079

Annotation: Diacetylchitobiose uptake system ATP-binding protein MsiK

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 375 PF00005: ABC_tran" amino acids 21 to 162 (142 residues), 108.6 bits, see alignment E=6.1e-35

Best Hits

KEGG orthology group: K10195, oligogalacturonide transport system ATP-binding protein (inferred from 91% identity to cro:ROD_28881)

Predicted SEED Role

"ABC sugar transporter, ATP-binding subunit"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (375 amino acids)

>MPMX20_03712 Diacetylchitobiose uptake system ATP-binding protein MsiK (Enterobacter sp. TBS_079)
MAEVIFNKLEKVYSNGFKAVHAIDLKIAEGEFMVIVGPSGCAKSTTLRMLAGLETISGGE
VRIGDKIVNNLAPKERGIAMVFQNYALYPHMTVRENLAFGLKLSKLPKDQIESQVNEAAK
ILELEELLDRLPRQLSGGQAQRVAVGRAIVKKPDVFLFDEPLSNLDAKLRASMRIRISDL
HKQLKKSGKPATTVYVTHDQTEAMTMGDRICVMKLGHIMQVDTPDNLYHKPKNMFVAGFI
GAPEMNIRQSQLVENAGKLHIAIGNETMPLNAGMQEKVSAYAGQAIYYGVRPEFVSLSDA
PFVDGGCSGEMVRVENMGHEFFVYLKVADYELTARIPSDEAKPMIDKGLHRKVYFKFDMN
KCHIFDAKTEQNLSL