Protein Info for MPMX20_03566 in Enterobacter sp. TBS_079

Annotation: HTH-type transcriptional regulator NimR

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 254 PF02311: AraC_binding" amino acids 21 to 132 (112 residues), 36.7 bits, see alignment E=6.9e-13 PF07883: Cupin_2" amino acids 23 to 85 (63 residues), 32.6 bits, see alignment E=1e-11 PF12833: HTH_18" amino acids 176 to 252 (77 residues), 85.9 bits, see alignment E=3.7e-28

Best Hits

KEGG orthology group: None (inferred from 89% identity to enc:ECL_04025)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (254 amino acids)

>MPMX20_03566 HTH-type transcriptional regulator NimR (Enterobacter sp. TBS_079)
MTTTSTFSFTHRPLVPYAHDYLHGDSEPWHQHDCAQLLHTLSGVVRVDTASGCWVVPPGR
GVWLPAGTPHSLRITGNVAARTLFIDPLARADLPATCQIVQISGLLRELILTSLTLEASY
SPGSRDERVYELILDEIRTMRVLPFHLPEPESEPLRTLCQQIRLLPGESWGSMQAANTLG
MSERTMNRHFKQQTGLSYGEWLRRARLLEALLRLGQGQPVLRVALDLGYGSHSAFTAMFR
RVMGISPSDYFKDS