Protein Info for MPMX20_03436 in Enterobacter sp. TBS_079

Annotation: DNA repair protein RecO

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 215 PF11967: RecO_N" amino acids 2 to 56 (55 residues), 48.7 bits, see alignment E=6.2e-17 TIGR00613: DNA repair protein RecO" amino acids 3 to 210 (208 residues), 110.6 bits, see alignment E=4e-36 PF02565: RecO_C" amino acids 64 to 206 (143 residues), 74.8 bits, see alignment E=6.7e-25

Best Hits

Swiss-Prot: 94% identical to RECO_ENT38: DNA repair protein RecO (recO) from Enterobacter sp. (strain 638)

KEGG orthology group: K03584, DNA repair protein RecO (recombination protein O) (inferred from 98% identity to enc:ECL_03903)

MetaCyc: 91% identical to recombination mediator protein RecO (Escherichia coli K-12 substr. MG1655)
RXN0-2606

Predicted SEED Role

"DNA recombination and repair protein RecO" in subsystem DNA repair, bacterial RecFOR pathway

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (215 amino acids)

>MPMX20_03436 DNA repair protein RecO (Enterobacter sp. TBS_079)
MLDVFTEESGRVRLVAKGARSKRSGLKGALQPFTPLLVRFGGRGEVKTLRSAEAVSLALP
LSGITLYSGLYVNELISRVLEHETRFSELFFDYLHCIQALAGATGTPEPALRRFELALLG
HLGYGVDFLHCAGSGDEVEDAMTYRYREEKGFIASVVIDNSTFTGRQLRALYTREFPDQD
TLRAAKRFTRIALKPYLGGKPLKSRELFRQFMPKR