Protein Info for MPMX20_03371 in Enterobacter sp. TBS_079

Annotation: Ribose import ATP-binding protein RbsA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 515 PF00005: ABC_tran" amino acids 22 to 171 (150 residues), 109 bits, see alignment E=3e-35 amino acids 282 to 437 (156 residues), 73.7 bits, see alignment E=2.4e-24

Best Hits

KEGG orthology group: K10441, ribose transport system ATP-binding protein [EC: 3.6.3.17] (inferred from 97% identity to enc:ECL_03805)

Predicted SEED Role

"Inositol transport system ATP-binding protein" in subsystem Inositol catabolism

Isozymes

Compare fitness of predicted isozymes for: 3.6.3.17

Use Curated BLAST to search for 3.6.3.17

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (515 amino acids)

>MPMX20_03371 Ribose import ATP-binding protein RbsA (Enterobacter sp. TBS_079)
MSQPLLKVTDLAKSFSGVWALSSAQLTVGAGEIHALLGENGAGKSTLLKALAGAQPQTRG
DIWFNGDTLPVDDSPVERQNKGIITIYQEFNLLPNMTVAENMFLGREPRKRNLIVDEKAV
NQEAQVILDYLQLNVAPTTPVARLSVAQQQMVEIARALTLNARLIIMDEPSAALSDSEVE
SLHRVVRELKNRGVSIIYVTHRLHEVFQLCDRFTVFQDGRFTGSGAVAQTNVEQLIRLMV
GRDVAFNRRPASETHHENKPVRLAVKGLSREKPPLDPHGIALHDISFHVHAGEVLGIAGL
VGAGRTEVARCLFGADAFTSGSFELDGVPYQPRDPMYALEQGIALVPEDRKKEGAVLGLS
IRDNLSLSSLSSLMQWRWFVNTRKEDDLIESYRKALQIKMVNSAQEVRKLSGGNQQKVIL
ARCMALNPRVLIVDEPTRGIDVGTKSEVHQVLFDMAKQGVAVIVISSDLPEVMAVSDRII
TLSEGRVTGEIHGDDANEERLMTMMAINHNALNAA