Protein Info for MPMX20_03057 in Enterobacter sp. TBS_079

Annotation: putative outer membrane usher protein EcpC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 830 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details PF16967: TcfC" amino acids 275 to 340 (66 residues), 65 bits, see alignment E=3.6e-22 PF15976: CooC_C" amino acids 730 to 821 (92 residues), 61.6 bits, see alignment E=5.9e-21

Best Hits

Swiss-Prot: 44% identical to ECPC_ECO27: Probable outer membrane usher protein EcpC (ecpC) from Escherichia coli O127:H6 (strain E2348/69 / EPEC)

KEGG orthology group: None (inferred from 86% identity to enc:ECL_03398)

Predicted SEED Role

"CFA/I fimbrial subunit C usher protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (830 amino acids)

>MPMX20_03057 putative outer membrane usher protein EcpC (Enterobacter sp. TBS_079)
MSFKYLIGGSLLLSYALTSGVAHSAPVKIGNYVIPGAFARSLEQGMTVPVYIRYQETDTK
SQQKIADAVISLVEGNIVVKSIMIADLPNNAVLSEKTREMVEKIGDAKFIDNTSLALSRD
ARLKLNVSSFHLEMIVSRDALTEAVVARSSLLGPSSVDRLSTVLNYNFGTYYNDYRNGSS
SRSYLTLDNTTSLREHHLNINGSVYGIGESNRSSKLYRAMYERDYEGYRLALGMLDTWNV
QSIASLNALNGGKIYGVSYGNKGSTVVENTSLSLIPITIFLPSAGEVHVFRDGRLLSVQN
FNMGSYEIDTSRFPYGVYDVTVDVVVNGRTVNTRVSRVNKIFARQQAAGLHEVAWQIFGG
SLDYDRVSYKRNHYRDAGSEQTWIAGGAASLTLAMLSGLTLKATGYGFDDNAVNETDITL
NVNEYVSVGTQTLVANDGTWRNVSSASLNAPGGFGSLWASREDSKIGNRLPVQERDNYSV
GATLNLSRFIPHGGTLTVSQTENRYSGNTYRNLDYSTTLYAGRYATVGLRAGIQRYYYNN
TNDDGRQERYVSLDLSLPLASWMSVGVSRDRYGATQGNISARKQFEDSVITSAGISASTR
LSGEQNYDNNYAVNGNLSYDTRYNGGTVSVTRSADNSTNMNFSSQGSVAWAGGDFGLSKE
RQRSGIIVKTDLVGDGKLAAKINNRNYILSGKSSFIALPPYAQYKLEIMNDKNSEDSFDI
VSGRKQALNLYPGNVGVVSPEVKSMVTVFGRVRYPNGELASNTDIHNHIGKTRTDAKGEF
AIDIDKKYPVITLVSANGNICEADLDLEKARGAAWVGDVKCAPQTTMAQR