Protein Info for MPMX20_03038 in Enterobacter sp. TBS_079

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 406 transmembrane" amino acids 7 to 24 (18 residues), see Phobius details amino acids 31 to 48 (18 residues), see Phobius details amino acids 55 to 73 (19 residues), see Phobius details amino acids 84 to 104 (21 residues), see Phobius details amino acids 117 to 138 (22 residues), see Phobius details amino acids 144 to 163 (20 residues), see Phobius details amino acids 172 to 191 (20 residues), see Phobius details amino acids 203 to 231 (29 residues), see Phobius details amino acids 243 to 264 (22 residues), see Phobius details amino acids 282 to 296 (15 residues), see Phobius details amino acids 327 to 348 (22 residues), see Phobius details amino acids 368 to 397 (30 residues), see Phobius details TIGR04010: putative colanic acid polymerase WcaD" amino acids 1 to 404 (404 residues), 859.6 bits, see alignment E=1.8e-263

Best Hits

Swiss-Prot: 91% identical to WCAD_ECOLI: Putative colanic acid polymerase (wcaD) from Escherichia coli (strain K12)

KEGG orthology group: K13620, putative colanic acid polymerase (inferred from 98% identity to enc:ECL_03379)

MetaCyc: 91% identical to colanic acid polymerase (Escherichia coli K-12 substr. MG1655)
2.4.99.-

Predicted SEED Role

"Colanic acid polymerase WcaD" in subsystem Colanic acid biosynthesis

MetaCyc Pathways

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (406 amino acids)

>MPMX20_03038 hypothetical protein (Enterobacter sp. TBS_079)
MSRSIRVCSYLLLPLIYLLVNVKIAQLGESFPITIVTFLPVLLLLYVDKINLKKLMMALG
LGVGLTLFNYIFGQSLDASKYVTSTMLFVYIVIIIGMVWSIRFKVISPHNYRKILRFFYI
AVALIVMLAALEMAQIILTGGSSLMEIISKYLIYSNSYVLNFIKFGGKRTTALYFEPAFF
ALALISIWLSIKQFGIKTPKTDAMILAGIVLSGSFSGVMTFILFYLLEWAFQYLNKDAIK
KKLPLAIISLTVFMVGVIFAFPYISERLGDLGTEGSSSYYRIIGPLVMVGYSLTHIDGVV
RFGSLYEYVASFGIFNGADVGKTIDNGLYLLIIYFSWFAVLLTLWYLFKVFKMMINAFGD
NQNFRVQLYLFTPVSLFFTGSIFSPEYAFLIVCPFILRKALNITNV