Protein Info for MPMX20_02967 in Enterobacter sp. TBS_079

Annotation: HTH-type transcriptional regulator HdfR

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 297 PF00126: HTH_1" amino acids 9 to 67 (59 residues), 53.3 bits, see alignment E=2.1e-18 PF03466: LysR_substrate" amino acids 98 to 283 (186 residues), 39.1 bits, see alignment E=5.7e-14

Best Hits

KEGG orthology group: None (inferred from 84% identity to enc:ECL_03253)

Predicted SEED Role

"Transcriptional regulators, LysR family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (297 amino acids)

>MPMX20_02967 HTH-type transcriptional regulator HdfR (Enterobacter sp. TBS_079)
MSTVIYSFAQLEAFTAVVEYGGLAKAAMKLGKDRTTLRDLIDFLEDGLGYRLFVREGRTL
RLTPEGEQLQRQAHLLMRQVKAFEAFASAVPDRATQDITLVYDPFTSRPFLQALIGEMAK
RHLRLSLVSASRDDAEAMLASGQADLGICQARNRSVGNEMEWRALGAIDMDFYACNTLFA
ETTQPLSLLELSLVPQVIMHAASDEPVARRLQISGHTLFTNELEMLRVLLEQGCGWGFLP
THFQPTGWKKVKRLHTEVGSQGISQTMVTIWKPGSDKREKIAETLSLLPALWKKSAL