Protein Info for MPMX20_02674 in Enterobacter sp. TBS_079

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 499 TIGR03355: type VI secretion protein, EvpB/VC_A0108 family" amino acids 18 to 492 (475 residues), 739 bits, see alignment E=1.2e-226 PF05943: VipB" amino acids 68 to 370 (303 residues), 455.5 bits, see alignment E=7.3e-141 PF18945: VipB_2" amino acids 380 to 491 (112 residues), 151.4 bits, see alignment E=1.1e-48

Best Hits

KEGG orthology group: K11900, type VI secretion system protein ImpC (inferred from 99% identity to enc:ECL_01540)

Predicted SEED Role

"Uncharacterized protein ImpC"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (499 amino acids)

>MPMX20_02674 hypothetical protein (Enterobacter sp. TBS_079)
MSNQTQQHEQQSGQAFSQDEFSALLNKEFRPKTDQARSAVESAVKTLAQQALENTVTFSS
DTYRTIQNLIAGIDEQLSQQVNQIIHHEEFQKLESAWRGLSYLVNNTETDEMLKIRFMSI
SKQELGRTLKRFKGVGWDQSPIFKKIYEQEYGQFGGEPFGCIVGDYYFDHSPQDVELLGE
MARIGSAAHCPFITGTAPGVMQMESWQELANPRDLTKIFQNTEYAAWRSLRESEDARYLG
LVMPRFLSRLPYGIRTNPVDSFDFEEQTDGANHNSYSWANAAYAMAANINRSFKEYGWCT
SIRGVESGGAVENLPCHTFPSDDGGVDMKCPTEIAISDRREAELAKNGFMPLVHRKNSDF
AAFIGAQSLQKPAEYHDPDATANARLASRLPYLFACCRFAHYLKCIVRDKIGSFREREEM
ERWLNDWVMNYVDGDPANSSQETKSRKPLAAAEVQVQEIEDNPGYYAAKFFLRPHYQLEG
LTVSLRLVSKLPSLKTKDA