Protein Info for MPMX20_02079 in Enterobacter sp. TBS_079

Annotation: D-alanine--D-alanine ligase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 signal peptide" amino acids 1 to 15 (15 residues), see Phobius details PF00289: Biotin_carb_N" amino acids 1 to 110 (110 residues), 144.4 bits, see alignment E=7.2e-46 TIGR02712: urea carboxylase" amino acids 3 to 1197 (1195 residues), 1842.7 bits, see alignment E=0 PF02786: CPSase_L_D2" amino acids 116 to 319 (204 residues), 201.6 bits, see alignment E=4.7e-63 PF07478: Dala_Dala_lig_C" amino acids 146 to 291 (146 residues), 35.4 bits, see alignment E=3.3e-12 PF02785: Biotin_carb_C" amino acids 338 to 446 (109 residues), 104.5 bits, see alignment E=1.3e-33 TIGR00724: biotin-dependent carboxylase uncharacterized domain" amino acids 454 to 772 (319 residues), 303.2 bits, see alignment E=1.9e-94 PF02626: CT_A_B" amino acids 478 to 751 (274 residues), 307.9 bits, see alignment E=2.9e-95 PF02682: CT_C_D" amino acids 801 to 1018 (218 residues), 136.8 bits, see alignment E=3.2e-43 PF13533: Biotin_lipoyl_2" amino acids 1131 to 1163 (33 residues), 24 bits, see alignment (E = 1e-08) PF00364: Biotin_lipoyl" amino acids 1132 to 1195 (64 residues), 54.3 bits, see alignment 4e-18

Best Hits

Predicted SEED Role

"Urea carboxylase (EC 6.3.4.6)" in subsystem Urea decomposition (EC 6.3.4.6)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

No predicted isozymes

Use Curated BLAST to search for 6.3.4.6

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1200 amino acids)

>MPMX20_02079 D-alanine--D-alanine ligase (Enterobacter sp. TBS_079)
MLTTLLIANRGAIACRILRTLRTMKIRGVAVYSEADISSLHIREADEALSLGDGPAANTY
LDSTKIIAAAKASGAQAIHPGYGFLSENAAFAEACDAAGIAFVGPTPEQLRLFGLKHTAR
ALAKTHGVPMLEGTDLLADVNQAVTAAAGVGYPVMLKSTAGGGGIGMRVCYDAEALRDAF
DAVVRLGKNNFSDAGVFIEKYIERARHLEVQLFGDGKGEVIALGVRDCSVQRRNQKVLEE
TPAPNLPAGMAQALCEAAITLGKAVNYRSAGTVEFVYDSDAARFYFLEMNTRLQVEHGVT
EQVWGVDLVRWMIELAAGTLPPLTTLRDTLKPKGHAIQARIYAENPGRQFQPSPGLLTDV
AFPPDDRVTLRIDSWVEAGCEVPPFFDPMLAKMIAWQPTREAAIRVLHSALGETRLYGVE
TNRSYLQQILTFAPFAAGEPWTRCLEHLMYQASTLEVLSAGTQTTVQDYPGRTGYWAVGV
PPSGPMDSLALRLGNRLLGNKDDAAALEITLSGPTLKFNCDAQLVVTGAEIALTLDGEPL
ANNHVFRVRAGMTLRMGEIRGEGVRSYLCLRGGFNVPEYLGSKSTFTLGQFGGHAGRALR
TGDILHLAPLIEPVADAPLPQALHTRLDAVRELRVIYGPHGAPEYFTPDYIATFFATEWE
VHFNSSRTGVRLIGPKPEWVRDSGGEAGLHPSNIHDNPYAIGAVDFTGDMPVILGPDGPS
LGGFVCPVTIIEADLHAVGQLKAGDYVRFVPVDIATARWLAQAQERQIASLTPQPVTWQP
AGLDSPIVLTQGTDDKRLVARVSGDTHLLLEIGEPELDLVLRFRGHALMQALEDRALKGV
IDLTPGIRSLQIHYQPETLRLDSLLEVIAGLWQGVCDQDSLDVPSRIVWLPLSWDDPACQ
KAIDKYMTTVRRDAPWCPSNLEFIRRINDLANIDEVYKTVFDARYLVMGLGDVYLGAPVA
TPLDPRHRLVTTKYNPARTWTAENSVGIGGAYLCIYGMEGPGGYQFVGRTLQMWNRYRTV
EDFGGKPWLLRFFDQIRFYPVSAGELQTIRRDFPLGRYPLRIEHTTLKLAEYQQFLADEA
PEIEAFRAHQQAAFNAERERWIAGGQAHFDSSDETTDDGDDVPLRSGESGVESPVAGNLW
QVNVEVGNTVREGDVLVVLESMKMEIPLVATQDGVVSQVRVQPGSSVRAGQCVVVVEKTA