Protein Info for MPMX20_01885 in Enterobacter sp. TBS_079
Annotation: Inner membrane protein YdjM
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 88% identical to YDJM_ECOLI: Inner membrane protein YdjM (ydjM) from Escherichia coli (strain K12)
KEGG orthology group: K07038, inner membrane protein (inferred from 96% identity to ent:Ent638_1715)Predicted SEED Role
"Membrane-bound metal-dependent hydrolase YdjM, induced during SOS response"
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (196 amino acids)
>MPMX20_01885 Inner membrane protein YdjM (Enterobacter sp. TBS_079) MTAEGHLLFSIACAVFAKNAELTPVLAQGDWWHIVPSAVLTCLLPDIDHPKSFLGQRLKW ISKPIARAFGHRGFTHSLLAVFGLLTLFYLKVPESWIVPADAIQGMVLGYLSHILADMLT PAGVPLLWPCRWRFRLPILAPQKGNQLERVLCMALFAYAVWMPQTLPENSAVRWSSQMIN SLQFQFNRFINHQIEH