Protein Info for MPMX20_01628 in Enterobacter sp. TBS_079

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 513 TIGR03355: type VI secretion protein, EvpB/VC_A0108 family" amino acids 45 to 509 (465 residues), 672.1 bits, see alignment E=2.4e-206 PF05943: VipB" amino acids 88 to 388 (301 residues), 412.2 bits, see alignment E=1.2e-127 PF18945: VipB_2" amino acids 398 to 508 (111 residues), 134.9 bits, see alignment E=1.4e-43

Best Hits

KEGG orthology group: K11900, type VI secretion system protein ImpC (inferred from 96% identity to pam:PANA_4150)

Predicted SEED Role

"Uncharacterized protein ImpC"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (513 amino acids)

>MPMX20_01628 hypothetical protein (Enterobacter sp. TBS_079)
MSVKNENAAGNESVVLERPAAGGVYASLFEKINLNPVSELSALDIWQDAQAMSDATADER
LTAGMKVFLECLTKAGSKVEKLDKNLIDHHIAELDYQISRQLDAVMHHEDFQAVESLWRG
VKSLVDKTDFRQNVKVELLDMSKEDLRQDFEDCPEIVQSGLYKHTYIDEYDTPGGEPIAA
LISAYEFDASAQDVALLRNISKVSAVAHMPFIGSAGPKFFLKDNMEDVAAIKDIGNYFDR
AEYIKWKSFRETDDSRYIGLVMPRVLGRLPYGPDTVPVRSFNYVEEVKGPDHDKYLWTNA
SFAFASNMVRSFINNGWCVQIRGPQAGGAVQDLPIHLYDLGTGNQVKIPSEVMIPETREF
EFANLGFIPLSYYKNRDYSCFFSANSTQKPATYDTADATANSRINARLPYIFLLSRIAHY
LKLIQRENIGTTKDRRLLELELNTWVRGLVTEMTDPGDELQASHPLRDAKVVVEDIEDNP
GFFRVKLYAVPHFQVEGMDVNLSLVSQMPKAKA