Protein Info for MPMX20_01611 in Enterobacter sp. TBS_079

Annotation: Inner membrane protein YccF

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 148 transmembrane" amino acids 7 to 35 (29 residues), see Phobius details amino acids 73 to 99 (27 residues), see Phobius details amino acids 102 to 124 (23 residues), see Phobius details PF03733: YccF" amino acids 4 to 53 (50 residues), 37.2 bits, see alignment E=1.9e-13 amino acids 77 to 127 (51 residues), 67.6 bits, see alignment E=6.1e-23

Best Hits

Swiss-Prot: 88% identical to YCCF_SHIFL: Inner membrane protein YccF (yccF) from Shigella flexneri

KEGG orthology group: None (inferred from 96% identity to enc:ECL_02685)

Predicted SEED Role

"Inner membrane protein YccF"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (148 amino acids)

>MPMX20_01611 Inner membrane protein YccF (Enterobacter sp. TBS_079)
MRTVLNVLNFVLGGFATTLAWLFATLVSIVLIFTLPLTRSCWEITKLSFIPYGNEAVHVD
ELNPESKNALLNTGGTVLNILWLVFFGWWLCVMHIFAGIAQCISIIGIPVGIANFKIAAI
ALWPVGRRVVPVEVAQAAREANARRRFQ