Protein Info for MPMX20_01584 in Enterobacter sp. TBS_079

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 183 signal peptide" amino acids 1 to 32 (32 residues), see Phobius details PF05951: Peptidase_M15_2" amino acids 34 to 183 (150 residues), 206 bits, see alignment E=2.5e-65 PF08291: Peptidase_M15_3" amino acids 78 to 176 (99 residues), 49.5 bits, see alignment E=4.4e-17

Best Hits

Swiss-Prot: 90% identical to YCBK_SHIFL: Uncharacterized protein YcbK (ycbK) from Shigella flexneri

KEGG orthology group: None (inferred from 97% identity to enc:ECL_02727)

MetaCyc: 90% identical to peptidoglycan L,D-endopeptidase (Escherichia coli K-12 substr. MG1655)
3.4.-.-

Predicted SEED Role

"FIG001587: exported protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (183 amino acids)

>MPMX20_01584 hypothetical protein (Enterobacter sp. TBS_079)
MDKFDANRRKLLALGGVALGAAAILPTPAFATLSTPRPRVLTLNNLHTGESLKAEFFDGR
GYIQDELARLNHFFRDFRANKIKAIDPGLFDQLFRLQGLLGTSKPVQLISGYRSVDTNNE
LRAHSRGVAKKSYHTKGQAMDFHIEGVSLANIRKAALSMRAGGVGYYPSSNFVHIDTGPV
RHW