Protein Info for MPMX20_01112 in Enterobacter sp. TBS_079
Annotation: putative fimbrial-like protein SfmH
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 72% identical to FIMH_SALTY: Type 1 fimbrin D-mannose specific adhesin (fimH) from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
KEGG orthology group: K07356, fimbrial protein (inferred from 81% identity to ent:Ent638_0991)Predicted SEED Role
"Fimbriae-like adhesin SfmH"
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Compare to protein structures
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (335 amino acids)
>MPMX20_01112 putative fimbrial-like protein SfmH (Enterobacter sp. TBS_079) MSKIHCLALSLLSILPVGNALATVCVNEKGVPTEVHYDLTDKFNSSNNQIGQVVTLSEKS QWVGVNAVCPKGTTGNTTKRSYVTDYPVTGTSDGYQYLKLNDYLDGAMKITDSFAGVFYP PKSYIQMGSHPNVSKNKPFGVQDSSLVFRLKVTRRFINMVVIPRATMFRVYVTTTSSDPL TSPVYTISYSGTIQVPQSCAINAGNIVEFDFGDIGASLFSKAGAGNKPEGVTAQSKTIAI KCTNVEANAMLTMRVEAEKVSSNAVVSDNPDVGFVIANESGTPLTPNNLTSKIPFRLDDS AQAQVGIRVWPVSVTGNKPAEGRFTSRGYLRVDYD