Protein Info for MPMX20_01041 in Enterobacter sp. TBS_079

Annotation: Multidrug resistance-like ATP-binding protein MdlB

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 593 transmembrane" amino acids 25 to 47 (23 residues), see Phobius details amino acids 58 to 81 (24 residues), see Phobius details amino acids 138 to 161 (24 residues), see Phobius details amino acids 167 to 185 (19 residues), see Phobius details amino acids 250 to 272 (23 residues), see Phobius details PF00664: ABC_membrane" amino acids 27 to 296 (270 residues), 139.3 bits, see alignment E=2e-44 PF00005: ABC_tran" amino acids 357 to 505 (149 residues), 104.4 bits, see alignment E=8e-34

Best Hits

Swiss-Prot: 87% identical to MDLB_ECO57: Multidrug resistance-like ATP-binding protein MdlB (mdlB) from Escherichia coli O157:H7

KEGG orthology group: K06148, ATP-binding cassette, subfamily C, bacterial (inferred from 95% identity to enc:ECL_01209)

Predicted SEED Role

"Multidrug resistance-like ATP-binding protein mdlB"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (593 amino acids)

>MPMX20_01041 Multidrug resistance-like ATP-binding protein MdlB (Enterobacter sp. TBS_079)
MRKTVTQWPTLKRLLAYGSPWRKPLSLAVLLLWIAAIAEVSGPLLISYFIDNMVAKSYLP
LGLVAGLGVAYVGLQLTAASLHYAQSLLFNRAAVGVVQKLRTDVMDAALRQPLSEFDTQP
VGQVISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLNWRMALVAITIFPAVLI
VMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMA
RMQTLRLDGFLLRPLLSLFSALVLCGLLMLFGMSANGTIEVGVLYAFISYLGRLNEPLIE
LTTQQSMLQQAVVAGERVFELMDRPRQTYGDDERPLQSGEITFDKVSFAYREDRLVLQDI
SLDVPSRGFVALVGHTGSGKSTLASLLMGYYPVSQGEIRIDGRPLASLSHNVLRKGVAMV
QQDPVVMADTFYANVTLGRDYTQQQVWDVLETVQLAELARGFSDGINTRLGEQGNNLSVG
QKQLLALARVLIETPQVLILDEATASIDSGTEQAIQLALAAVRDHTTLVVIAHRLSTIVD
ADTILVLHRGQAVERGTHRELLEAKGRYWQMYQLQLAGEELAASVREDESLSA