Protein Info for MPMX20_00363 in Enterobacter sp. TBS_079

Annotation: IS21 family transposase IS1162

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 509 PF00665: rve" amino acids 140 to 251 (112 residues), 39.6 bits, see alignment E=5.4e-14 PF22483: Mu-transpos_C_2" amino acids 321 to 392 (72 residues), 71.2 bits, see alignment E=4.9e-24

Best Hits

Swiss-Prot: 48% identical to TRA2_PSEFL: Putative transposase for insertion sequence IS1162 from Pseudomonas fluorescens

KEGG orthology group: None (inferred from 61% identity to alt:ambt_05430)

Predicted SEED Role

"Mobile element protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (509 amino acids)

>MPMX20_00363 IS21 family transposase IS1162 (Enterobacter sp. TBS_079)
MARLRTRMSKIKELLRLKFDCHLPNRSISTCLNIGCSTVSDVVTRFRGSQLAWPLPEDMT
ESQLEALLYTGRASDSHKRMPDFPLCHQELKRKGMTKILLWQEYQQEAGENAYGYSQFCN
LYGEWLKLQKRSMRQHHVAGEKLFLDFCGPTIPVINPDTGEVRQAHIFVATLGASNYTYV
EACENQRQESWLMAHVRAFEFFGGVPQLLIPDNLKAAVSHADRYEPVLNENYRKLARHYN
TAVLPARPRKPKDKPKVENAVQVVERWILMRLRHEVFHTLAALNLAISELLQDLNERPFR
RLPGCRKSLYEQLDKPALKALPPYRYEYVDIRRAKVGPDYHVLYSKHAYSVPHALVGSHI
DIEAGARLIRLYHRGTLVAQHPRAQQQGGFTTQAEHMPESHRRQRWSPERLLSWGESIGS
ATRAVVAWHLHHRAHPEQAYRTCLGLLNLSREYGDARLENACQQALLLERPWRQVILNLL
TNHRDRLKDEAPDESPVEHSNVRGAGYYH