Protein Info for MPMX20_00243 in Enterobacter sp. TBS_079

Annotation: putative lipoprotein GfcB

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 212 signal peptide" amino acids 1 to 19 (19 residues), see Phobius details PF11102: YjbF" amino acids 26 to 206 (181 residues), 194.7 bits, see alignment E=7.1e-62

Best Hits

Swiss-Prot: 83% identical to YJBF_ECOLI: Uncharacterized lipoprotein YjbF (yjbF) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 96% identity to enc:ECL_00279)

Predicted SEED Role

"YjbF outer membrane lipoprotein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (212 amino acids)

>MPMX20_00243 putative lipoprotein GfcB (Enterobacter sp. TBS_079)
MKRPGIILICLLLQACSATTKGLGHSLWESMFGTPGVHLTDDELQNMPYASQYMQLNDGP
QLFVVLAFDENGQQKWVTQDQATIVTQHSRIVKTLLGGDNLLEVNNLAADPLNKPNQITD
GASWTRTMGWTEHKQVRYATARSTFRWDGTDSVNVGSDETRVRVLDEEVTTDQATWHNRF
WVDDDGQIRQSLQYLGAGFFPVKTTLIKAAKS