Protein Info for MMP_RS08665 in Methanococcus maripaludis S2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 213 transmembrane" amino acids 6 to 22 (17 residues), see Phobius details amino acids 29 to 45 (17 residues), see Phobius details amino acids 57 to 78 (22 residues), see Phobius details amino acids 99 to 119 (21 residues), see Phobius details amino acids 125 to 146 (22 residues), see Phobius details amino acids 153 to 173 (21 residues), see Phobius details amino acids 179 to 197 (19 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 100% identity to mmp:MMP1683)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (archaea)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q6LWM6 at UniProt or InterPro

Protein Sequence (213 amino acids)

>MMP_RS08665 hypothetical protein (Methanococcus maripaludis S2)
MDYQILLLVLISGIIGYVFTKISKSMTGYYLVLVLMCTINTYVLSEITLKTLSINSIIPV
IGFSIATMVVFEISRAYFDNSLSIDASSFQGLQEFGLEYYIAIILFYSALLFVFLLYIIP
LGYLSMFYIAFIMLITSFALVGSSIVRYWAFELYIILYLTLMVGLILLNIIEIDYYPEIL
LPYLFILFYYLDMRSFIKKKASSRVSLKKRRLR