Protein Info for MMP_RS08410 in Methanococcus maripaludis S2

Annotation: DUF169 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 230 PF02596: DUF169" amino acids 12 to 219 (208 residues), 219.7 bits, see alignment E=2e-69

Best Hits

Swiss-Prot: 62% identical to Y308_METJA: Uncharacterized protein MJ0308 (MJ0308) from Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)

KEGG orthology group: None (inferred from 100% identity to mmp:MMP1637)

Predicted SEED Role

"Uncharacterized protein MJ0308"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (archaea)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q6LWR9 at UniProt or InterPro

Protein Sequence (230 amino acids)

>MMP_RS08410 DUF169 domain-containing protein (Methanococcus maripaludis S2)
MEIQKIKELGKKLQDLLALEKPATAVKLVKSKEEIPEGYAEIETPVRHCEMIQNARTEGK
KFYATVEKQACKGGAYAIGILQNPPEALKSGVLYHNLGNFPTEEAAIKTVQAIPRVKEAI
YAGVYAPLNDADFEPDSIVVLVTPKQGLRLTQALNYAAGGRFQADFAGIQSLCADAVAAV
KTRGVANATLGCNGSRAYAHIKDDELVFAFPLSDLENVIGALEYFKEKWN