Protein Info for MMP_RS08085 in Methanococcus maripaludis S2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 311 transmembrane" amino acids 14 to 35 (22 residues), see Phobius details amino acids 56 to 78 (23 residues), see Phobius details amino acids 109 to 113 (5 residues), see Phobius details amino acids 119 to 120 (2 residues), see Phobius details amino acids 124 to 149 (26 residues), see Phobius details amino acids 180 to 200 (21 residues), see Phobius details amino acids 221 to 243 (23 residues), see Phobius details amino acids 253 to 270 (18 residues), see Phobius details amino acids 290 to 310 (21 residues), see Phobius details PF07670: Gate" amino acids 19 to 116 (98 residues), 30.1 bits, see alignment E=2.9e-11

Best Hits

KEGG orthology group: None (inferred from 100% identity to mmp:MMP1571)

Predicted SEED Role

"membrane protein, putative"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (archaea)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q6LWY3 at UniProt or InterPro

Protein Sequence (311 amino acids)

>MMP_RS08085 hypothetical protein (Methanococcus maripaludis S2)
LDGTLIAGAFYSSFLYTVRISVVVLLTIYIVNYFVNRGLLEKISDYASPVTKKLNLNSFL
VSSILVSFFSPTVGYTMLADGITEKELTQTEVLAGTLANSFPAVFSHVLTYYIPVVIPIL
GYTGIIYVILRLSIAFIKSMLGLFILLIISRKNTGNIKSSGNKINNKISPFEKTFKFARR
FVPVMFISMFLVLYLSKTGFFDVFSRIVMPVTNIFNLNPNTGILAITEIINVSAAMVMAG
TFLNEASLTQNEVLIGLIFGNIVAFSTRSVKHSIPLHFSLFGSKMGTKVIILNSGVTIIL
DILIIGFLIMI