Protein Info for MMP_RS06150 in Methanococcus maripaludis S2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 682 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details transmembrane" amino acids 650 to 670 (21 residues), see Phobius details PF01391: Collagen" amino acids 132 to 189 (58 residues), 27.8 bits, see alignment 1.7e-10

Best Hits

KEGG orthology group: None (inferred from 97% identity to mmp:MMP1194)

Predicted SEED Role

"Flagellar hook-length control protein FliK" in subsystem Flagellum

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (archaea)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q6LXZ9 at UniProt or InterPro

Protein Sequence (682 amino acids)

>MMP_RS06150 hypothetical protein (Methanococcus maripaludis S2)
MKKIYTVLLVFALVSCLSIVSADSIPQFPHTFYGDVTINELPATGTLKVLVNGVESEQVQ
VTDGEFGKGLFDAKLVVNGASGDQITFSFESEGYTLDSDYKIYLIDSEQYVSEIDFVSGG
YTEILLEFTGTGDGGDTGDTGDTGDTGDTGDTGDTGDTGDTGDTGDTGDTGDTGDTGDTG
DTGDTGDTGNGEELPLNPGVFYGLVYLDESLASSTLNLYVDGVLQDSIGIENGVFGGEGA
LDDKLIATGYDGNSNVVTFSLVSGGETYSSFTAELSDATYEDELPYIEGVHYVVLTFSET
ADTGNGEELPLNPDVFYGLVYLDESLASSTLNLYVDGVLQDSIGIENGVFGGEGALDDKL
IATGYDGNSNVVTFSLVSGGETYSSFTAELSDATYEDELPYIEGVHYVVLTFSEIADTGD
TGDSGDTGNINSSEQLPLNPDIFYGMVYLDEALASSTLNLYVDGALQNSIGIENGVFGGE
GPLDNKLIATGYDGNSNVVTFSLVSGGETYSSFTAELSDATYEDELPYIEGVHYVVLTFS
ETADTGDTGDTSDSGSSSGGGGGGSSRSSSSSSSSIISSSDSSETPVTTSVPKTSSSGTS
TDSSSNTVESSENVGPDTTQDSPDDTLDYGSDSNETGVVLQQESPLGGINMYLALAAILL
ILIALAAAWYQSKEKPEVVPQQ