Protein Info for MMP_RS05495 in Methanococcus maripaludis S2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 613 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details transmembrane" amino acids 589 to 609 (21 residues), see Phobius details PF05362: Lon_C" amino acids 48 to 187 (140 residues), 41.6 bits, see alignment E=5.3e-15

Best Hits

KEGG orthology group: K06870, (no description) (inferred from 100% identity to mmp:MMP1062)

Predicted SEED Role

"putative ATP-dependent protease"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (archaea)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q6LYC9 at UniProt or InterPro

Protein Sequence (613 amino acids)

>MMP_RS05495 hypothetical protein (Methanococcus maripaludis S2)
MKKLIIIFTILMSIVPTFAFDLENNTEFENCVSITAPAVSVTDEGYVGAAVDIDVKVSDG
EGHAYMDTLPLTDIDMQGSARIASKVAFDICGIDQESHDVYYIIRSDVPTVGGPSAGAVL
TVATIAAINNWTLNKNVMMTGMIGPDGTIGPVGGIIEKINVGAEQNVDYFLIPYGQQYQI
DENNNSVDCIEYGQNLGIKVVEVSNIYDVVYYFTNHDISTDYEKNPIIDGKYNEIMEKLS
EVTLENAKKSLEETEKLDLSKLNSSEKEEFEEDLKTASNLVYLGNELHSNEKYYTATSRS
FNSLIIFETLQSKYNYKDNESIKNYLLDMNESISEKKDVLSNVTLTKNNIEYVFSSKSRA
YEASELMDEAFYQYDEGNLSSAIEYAAYGKLRAETGIWWLELAPEEENPEKIDEKDLKYL
AREYLDNSEIVVVYTSTVLSEELVSYPMSQIDDSIDLYNKKEYLLSMSKSIDAYVYSTMF
LEYTTDVDYLSNLAQKKINKAENCMLNTENNSEYIPVSALSYFEYAENLDDKYSKILYFK
YSIAYAQMNMDVLKEFDSSAFNYNEESAFCEISKNSDNSNFGFDYKTCFINITYLITGLL
SGFLIGMWYRKNN