Protein Info for MMP_RS05490 in Methanococcus maripaludis S2

Annotation: IMPACT family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 202 PF01205: UPF0029" amino acids 20 to 126 (107 residues), 125.8 bits, see alignment E=7.5e-41 PF09186: DUF1949" amino acids 142 to 195 (54 residues), 38.3 bits, see alignment E=9.7e-14

Best Hits

KEGG orthology group: None (inferred from 100% identity to mmp:MMP1061)

Predicted SEED Role

"FIG000605: protein co-occurring with transport systems (COG1739)"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (archaea)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q6LYD0 at UniProt or InterPro

Protein Sequence (202 amino acids)

>MMP_RS05490 IMPACT family protein (Methanococcus maripaludis S2)
LDENSYKTLKSFSKVELVFKGSLFLGYGKPVKSEAEAKEFIDKIKEIHNDATHNVSAYRI
NIENNFAMKYDDDGEPQGSSGKPIYKVIELKNLQNTVIVVTRYFGGVKLGYGGLVKAYSD
TATEVINSSGILEVFEKSYLILEFDYSEIQKIKDISKIFGKIVDENYSDIVKFKLEIKKG
LEDEFTKKLINSTKNKIKIYNL