Protein Info for MMP_RS04245 in Methanococcus maripaludis S2

Annotation: right-handed parallel beta-helix repeat-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 PF05048: NosD" amino acids 149 to 345 (197 residues), 51.9 bits, see alignment E=7.2e-18 amino acids 524 to 727 (204 residues), 57.2 bits, see alignment E=1.7e-19 PF13229: Beta_helix" amino acids 170 to 305 (136 residues), 31.1 bits, see alignment E=1.7e-11 amino acids 526 to 686 (161 residues), 67.7 bits, see alignment E=9.4e-23

Best Hits

KEGG orthology group: None (inferred from 100% identity to mmp:MMP0815)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (archaea)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q6LZ14 at UniProt or InterPro

Protein Sequence (750 amino acids)

>MMP_RS04245 right-handed parallel beta-helix repeat-containing protein (Methanococcus maripaludis S2)
LELDPIDYNQINNSNYDTARNITSPGMYYLTENISNTNGIIISSDNVMLDGQGYFLNITG
NCGVNSTNHNNITVKNVKITTTSYSGIYFKNVNFPTVENNTINTTYLCSLWGSGYNFTVV
NNSMSSGFGGNYGLEQLTTYKVVGNTINGKPIYFYKNEENIGEIPSDASQIIISNCTNGQ
IKNLTLDENAVVIYIGDSSEITVKNCTIKPNIYHDYDIYLINSENCNVTNNTFGISENTN
FGVIKSYYSNNITISENTLNGMAMGFVFYKVTNSNIFENTFENVYGVSIGEQGGVSDVYV
YTNNFINSTRMDVENITFNSPANVSYLYNGAVYSGIAGNYWNDYSEPEAIINNGIWSIPY
SINELVNDSYPLVKEKPEDGKIHLTQSDFDSETGYIINKSGTYVLDEDITCDMGIRINAS
DVIISGWRHCLIGTGFNMSAGIYTVNGTYENIEIKHILLKNWAVGLSAPYFFTDEPSSFV
SNLAVSDCTFEFNNIGVGSAVSENITIESCEFINNTIEGEIPFGAGILSFQNSNADITNC
TFESNSVGVVSEVDENITIESCEFINNTIEEGPFGAGILMQNFNADITNCTFEYNKRGAI
LEGEYITADSCEFINNTIGLIPAMFYNGTVTGCTFENNDYGITTSDGFIGKTIEVQENTI
SQNNFIENGCGLYLGGVNNWVYLNRFENNGQNINSISLFGNYFQSPEVTYEYGGETYKGR
LGNYYGEELGTSNAGIFDKPYGIEGMLLRK