Protein Info for MMP_RS04155 in Methanococcus maripaludis S2

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 401 signal peptide" amino acids 1 to 30 (30 residues), see Phobius details transmembrane" amino acids 50 to 68 (19 residues), see Phobius details amino acids 79 to 97 (19 residues), see Phobius details amino acids 104 to 126 (23 residues), see Phobius details amino acids 137 to 158 (22 residues), see Phobius details amino acids 166 to 187 (22 residues), see Phobius details amino acids 215 to 236 (22 residues), see Phobius details amino acids 248 to 270 (23 residues), see Phobius details amino acids 279 to 298 (20 residues), see Phobius details amino acids 304 to 326 (23 residues), see Phobius details amino acids 340 to 360 (21 residues), see Phobius details amino acids 371 to 392 (22 residues), see Phobius details PF07690: MFS_1" amino acids 18 to 354 (337 residues), 90 bits, see alignment E=1.5e-29 PF00083: Sugar_tr" amino acids 36 to 186 (151 residues), 49.5 bits, see alignment E=3.3e-17

Best Hits

KEGG orthology group: None (inferred from 100% identity to mmp:MMP0797)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (archaea)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q6LZ32 at UniProt or InterPro

Protein Sequence (401 amino acids)

>MMP_RS04155 MFS transporter (Methanococcus maripaludis S2)
MIKKLDLNGRLTGFVGATFSLFVVFASSSAPIPLLNTYLKTLNLTSGDLSMTAVTYFVGC
VLSLLVFARVSNHLGRRPVALATLGIAVIGCIIFGYVQNASMLLIGRFIQGIASGLASST
ITTYIADNAPTSPKWISAAVISGAPVVGLSFGAFGAAVIQEYGFGSLSVIYMILIALLAF
CAVLIAVSPETVTPKRGVISSLIPQVSVPKNIRHLLPAAGSIFVGTWAIGGFYQAFSSSI
TAELLNTNSVMIAAAVFACLMTPYAIGGWISGRFDSNNAQSIGISAFFLSIVALIYSLKV
SAMIPFFMATVFAGISQGLAFTGSIRSLLDKIGQDDRAGLLSSIYIISYSGAAIPNMIVA
RLAGGFNLFEIAVGYGLLVTLVWITALFSLYVNKKRDFLRE