Protein Info for MMP_RS04065 in Methanococcus maripaludis S2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 676 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details transmembrane" amino acids 47 to 72 (26 residues), see Phobius details amino acids 655 to 673 (19 residues), see Phobius details PF22092: T26-6p_Ig-like_dom" amino acids 149 to 284 (136 residues), 93.6 bits, see alignment E=1.9e-30 PF22265: T26-6p_Ig-like_dom_2" amino acids 352 to 481 (130 residues), 220.2 bits, see alignment E=1.1e-69 PF20984: PT26-6P_helical" amino acids 488 to 626 (139 residues), 62.3 bits, see alignment E=9.5e-21

Best Hits

KEGG orthology group: None (inferred from 100% identity to mmp:MMP0780)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (archaea)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q6LZ49 at UniProt or InterPro

Protein Sequence (676 amino acids)

>MMP_RS04065 hypothetical protein (Methanococcus maripaludis S2)
MMNSKLFSIFCIFLIATLPSAHAFSVLGHELNAGWDDVAALGVGGVALGAVAVTAGAPVL
VAAGIGIGGAIAVDYAYRWATGKDVEESAAVTGAVKTNVTDEEYVNGSYVYEELAGYRQY
SEESAAKDIAEIKDKLESGIGTYSFKTSGTLSDVSVSMKGPDKIYGFSAFPVQLKFDEAL
TGSESSYVKIESVKIYLVDSDGVKWNERTYSDDIKLQEESNDYPDAIEEYILNFTMKAPD
PYIGKAKSQVTNAPNREILQELINAEVKEFELVVEIDGYAKLYKEESGYKLDPITGLEVW
KTWEEYDKTITIDTKLTTLEAWDRIHNGVYYVDGADGSLPTKFVNEVTPIAYSSYANGAT
SNIIGRCWASPVHCYNSSAQYKFILVGQPENLEPVPVTIEDDYRALVLKLRDDGVATIAS
ETPGNFHDMAVHNGVTTSLNYLKDDSTEAFETYFIVIADVDDDIDSALPVWCIIQPRISV
IDNVKYSLSEEFKEEILELLSDGSISDSDTERITEIIEISENSLKEKQYVAEIESEKYDD
NEKARNAISNALEDYEKAFEYYEKAKNTDDPEEVKVYTYLAGDIYEPAGDYWKEAAEKYN
LGLDDQGDALASNAEKLESLAAEYEPSLWFTAGSTISEWWDQFKSGFGIGDVPDTVLIIV
VVIVLVCGAAIVIKVL