Protein Info for MMP_RS04005 in Methanococcus maripaludis S2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 590 transmembrane" amino acids 20 to 41 (22 residues), see Phobius details amino acids 48 to 65 (18 residues), see Phobius details amino acids 76 to 94 (19 residues), see Phobius details amino acids 101 to 118 (18 residues), see Phobius details amino acids 126 to 155 (30 residues), see Phobius details amino acids 177 to 196 (20 residues), see Phobius details amino acids 240 to 259 (20 residues), see Phobius details amino acids 269 to 288 (20 residues), see Phobius details amino acids 300 to 322 (23 residues), see Phobius details amino acids 334 to 354 (21 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 100% identity to mmp:MMP0769)

Predicted SEED Role

"conserved hypothetical archaeal protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (archaea)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q6LZ60 at UniProt or InterPro

Protein Sequence (590 amino acids)

>MMP_RS04005 hypothetical protein (Methanococcus maripaludis S2)
MGSVSHILSGGNPFESSSMVGGIPGYLPLYGILCAGFCKLFSLDAFNGMIYFSLVIFAFS
SILWFQTFKKIFKNEWVSLIGVILSNGISIYPILKYTEFTEQIMIPLFILALYLTFTHKK
SVNYAFLGIIYGLLAISHTVAFVGATLIIATFMTYEICEKYKFNKINGIKSYLKENWKNL
GIFSIFGFPLSLLYWYKPIFVYKLVNTYDKMHMDTLDVGRLDIQINYVKNSFLNYFLNFK
SLSEGFITLMLIFGIYLLIFKRNFHKKEVFINLFVIGSIIATYCYFITEPLLKMNFIPTY
MSSFYIYPSAVLFSIYTLKYINEKLRDNSRKLKCITLSFGLLFILLTANSVSSFVEQPSE
NPWLPLAYLEIPECYASLDMYLEKNTAVNEVILSSKMLSSVVNSVTGRKVMVNHWAQQND
PYIDLPQRDIDAAIIFYGNNTAKKLELIKKYNVSYLFWNYYWVDTEYKFTENGEIKNSDP
LITYSKEYEKNTLIENNISFFELNSWVNPGLRGENIRKYDLLFVSPENYRYSNKSWYLGL
DPYLRELNSTENYKNSVKPWKEDLDPYLEEVWNYSADGQKIAILYKINIE