Protein Info for MMP_RS03575 in Methanococcus maripaludis S2

Annotation: ECF transporter S component

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 188 transmembrane" amino acids 6 to 27 (22 residues), see Phobius details amino acids 37 to 61 (25 residues), see Phobius details amino acids 68 to 88 (21 residues), see Phobius details amino acids 98 to 121 (24 residues), see Phobius details amino acids 146 to 173 (28 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 100% identity to mmp:MMP0682)

Predicted SEED Role

"Substrate-specific component STY3230 of queuosine-regulated ECF transporter" in subsystem ECF class transporters or Queuosine-Archaeosine Biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (archaea)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q6LZE7 at UniProt or InterPro

Protein Sequence (188 amino acids)

>MMP_RS03575 ECF transporter S component (Methanococcus maripaludis S2)
VNNKLPYLITAFGISINVLGGFVATFYDLPIFLNNLGTILCGLLLGPAGGALTGLFSNLI
IGSTVNSVYIPFTIVNVVVGFVAGYAAIKHDREFTSMLVHAFLISIIALCLVIPIEMFIF
GGPLDQTILSYATTINLNTGLNISAAIYFAEFPLMIADIVLSAIWAYVVLMLLPKKVLDI
LKINNENI