Protein Info for MMP_RS03125 in Methanococcus maripaludis S2

Annotation: cell division ATPase MinD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 261 PF10609: ParA" amino acids 4 to 232 (229 residues), 84.9 bits, see alignment E=2.5e-27 TIGR01969: cell division ATPase MinD" amino acids 4 to 253 (250 residues), 358.4 bits, see alignment E=8.3e-112 PF13614: AAA_31" amino acids 4 to 161 (158 residues), 69.6 bits, see alignment E=1.4e-22 PF09140: MipZ" amino acids 5 to 141 (137 residues), 35.1 bits, see alignment E=3.6e-12 PF06564: CBP_BcsQ" amino acids 5 to 228 (224 residues), 36.8 bits, see alignment E=1.3e-12 PF01656: CbiA" amino acids 5 to 212 (208 residues), 92.5 bits, see alignment E=8.2e-30 PF02374: ArsA_ATPase" amino acids 6 to 42 (37 residues), 27.2 bits, see alignment 8.9e-10 PF00142: Fer4_NifH" amino acids 9 to 246 (238 residues), 41 bits, see alignment E=6.5e-14

Best Hits

Swiss-Prot: 65% identical to Y547_METJA: Uncharacterized ATP-binding protein MJ0547 (MJ0547) from Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)

KEGG orthology group: K03609, septum site-determining protein MinD (inferred from 100% identity to mmp:MMP0593)

Predicted SEED Role

"Septum site-determining protein MinD" in subsystem Bacterial Cell Division or Bacterial Cytoskeleton

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (archaea)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q6LZN1 at UniProt or InterPro

Protein Sequence (261 amino acids)

>MMP_RS03125 cell division ATPase MinD (Methanococcus maripaludis S2)
MAITIAVASGKGGTGKTTTCANLAVALSQFGKDVTVIDADIAMANLELIMGIEGKPITLN
DVLSGNADIKSAIYEGPAGVKVVPAGVSLDSFKKARPERLLEVLSKLDEQSEVLLIDCPA
GIGKEALTAISAAEHLLVVVNPEISSISDALKVVSIANRVETNVLGAIINRVTEDSSELS
SRSIETILEIPIVGIVPEDTNVRRSSAFGVPIVLKHSDSPAAQSIMELGAKLVGKQYIPK
EKTKDSFVKKFFKGIFGGKKK