Protein Info for MMP_RS02845 in Methanococcus maripaludis S2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 203 transmembrane" amino acids 12 to 34 (23 residues), see Phobius details amino acids 41 to 63 (23 residues), see Phobius details amino acids 75 to 100 (26 residues), see Phobius details amino acids 120 to 136 (17 residues), see Phobius details amino acids 148 to 170 (23 residues), see Phobius details amino acids 176 to 199 (24 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 100% identity to mmp:MMP0538)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (archaea)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q6LZT5 at UniProt or InterPro

Protein Sequence (203 amino acids)

>MMP_RS02845 hypothetical protein (Methanococcus maripaludis S2)
MFNLIIKELGEHMPFTALGAIFGMVLLIIFNGISFSESYSIFYTLHPIHVFLSAFTTTSM
YLLHKKGSINGYKGFLTLFLIGYVGSLFIATISDSLIPYIGEIILDLPNRGAHIGFIEEF
WLVNLLAIFGIVLAYFKPFTKIPHSGHVFLSTAASLFHIIMALGTGLSFLMYFEIFIFLF
IAVWIPCCTSDIIFPLIFVKEKD