Protein Info for MMP_RS02670 in Methanococcus maripaludis S2

Annotation: ATP-binding cassette domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 343 PF00005: ABC_tran" amino acids 21 to 155 (135 residues), 101.9 bits, see alignment E=2.4e-33

Best Hits

KEGG orthology group: K02059, putative sulfate transport system ATP-binding protein (inferred from 100% identity to mmp:MMP0504)

Predicted SEED Role

"Molybdenum transport ATP-binding protein ModC (TC 3.A.1.8.1)" in subsystem Molybdenum cofactor biosynthesis or Transport of Molybdenum (TC 3.A.1.8.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (archaea)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q6LZW9 at UniProt or InterPro

Protein Sequence (343 amino acids)

>MMP_RS02670 ATP-binding cassette domain-containing protein (Methanococcus maripaludis S2)
MLVIENLRKNLSNFELYIEKLEVKNSDYFVFLGLSGSGKTTILEMIAGFIKPDSGKIMLN
GVDITNKPINERKIVLCNGKYLFPHLTIQKNIEYGIKHLKKPEKKEKVDNISKLLNITHL
LNRKPERLSSGEQQRVALAMALVMEPEIILLDEPLSSLDRLLHEKLMYDLKEVHKSSNVT
FIHVTHDFSEAAVLSNKMAILRNGKIEHIGTLQNVLKHPQNEFVAKFVGIKNILYGNCIE
KDGNYIIQLLGFEIPVKEANYGEITLGIFPKDIIVSKKSEKDSKIYAGKIKSIVPSGPFD
SKAVIEFNNIELISEISNSDLLKNPLKKGDSVEFYIDSISMIG