Protein Info for MMP_RS02610 in Methanococcus maripaludis S2

Annotation: DUF2162 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 239 transmembrane" amino acids 6 to 27 (22 residues), see Phobius details amino acids 38 to 57 (20 residues), see Phobius details amino acids 65 to 84 (20 residues), see Phobius details amino acids 101 to 124 (24 residues), see Phobius details amino acids 135 to 153 (19 residues), see Phobius details amino acids 168 to 193 (26 residues), see Phobius details amino acids 206 to 224 (19 residues), see Phobius details PF09930: DUF2162" amino acids 5 to 227 (223 residues), 238.7 bits, see alignment E=2.7e-75

Best Hits

KEGG orthology group: None (inferred from 100% identity to mmp:MMP0492)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (archaea)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q6LZY1 at UniProt or InterPro

Protein Sequence (239 amino acids)

>MMP_RS02610 DUF2162 domain-containing protein (Methanococcus maripaludis S2)
MMDELWQLGLMSAIIIFGIKIGLSLGFSGLSKKVSGTIVLLYGLGTLLLSKLASGYVDII
QKVIYEYNFVIFIVMSLMILYAGFHTIKEWKVNQKNSVASCSLAMIAPCPCCFGAVIASI
VLISPTLGISTFEIGKYASLILMITIGAVYLLSDAISRVLRAPRPVLMGNFMIFAGFYFL
ISALVIPNIVAGMSIQMSPMQYPEFSSLTHVFALTFGLLILGYVKNRKRMNFTDKMRSI