Protein Info for MMP_RS01930 in Methanococcus maripaludis S2

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 184 transmembrane" amino acids 6 to 32 (27 residues), see Phobius details amino acids 39 to 56 (18 residues), see Phobius details amino acids 62 to 83 (22 residues), see Phobius details amino acids 94 to 119 (26 residues), see Phobius details amino acids 130 to 148 (19 residues), see Phobius details amino acids 155 to 176 (22 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 100% identity to mmp:MMP0361)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (archaea)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q6M0B0 at UniProt or InterPro

Protein Sequence (184 amino acids)

>MMP_RS01930 hypothetical protein (Methanococcus maripaludis S2)
MKNITVTSLIAAIIGGIYFKTFFPILLIIFYIRDTRFKNSFLFLFTIYMLIFGYFFNPSD
FSILLIISMIVIPHLLILFELLLEIKQKYEKIDILIIICLLCGIPYPEIYIFGIVLLLIK
RFNNFLNKKIGIILIPTIISLLIFIKHLDMLNQNLIYKILVLTGPGVVLYSIYSFLNKES
MNNK