Protein Info for MMP_RS01210 in Methanococcus maripaludis S2

Annotation: sodium:solute symporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 477 transmembrane" amino acids 31 to 50 (20 residues), see Phobius details amino acids 59 to 79 (21 residues), see Phobius details amino acids 110 to 128 (19 residues), see Phobius details amino acids 143 to 163 (21 residues), see Phobius details amino acids 170 to 189 (20 residues), see Phobius details amino acids 218 to 236 (19 residues), see Phobius details amino acids 257 to 276 (20 residues), see Phobius details amino acids 310 to 338 (29 residues), see Phobius details amino acids 358 to 377 (20 residues), see Phobius details amino acids 383 to 406 (24 residues), see Phobius details amino acids 414 to 433 (20 residues), see Phobius details amino acids 439 to 461 (23 residues), see Phobius details PF00474: SSF" amino acids 19 to 418 (400 residues), 190.2 bits, see alignment E=3e-60

Best Hits

KEGG orthology group: None (inferred from 100% identity to mmp:MMP0220)

Predicted SEED Role

"Sodium/proline symporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (archaea)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q6M0P9 at UniProt or InterPro

Protein Sequence (477 amino acids)

>MMP_RS01210 sodium:solute symporter (Methanococcus maripaludis S2)
MIIGIATVTKKRIKGVSDFLLGGRNVNPWMSAFSYGTAYFSAVIFIGFAGKMGWSFGIPT
MWIVVGNTIIGSFLAWQVLGKKTREMTQRLGASTMPSFLEKRYKSKNLESLTAFIIFFFL
VPYSASIYKGLNFLFEGFGISPMNAYILMAALTAIYLYFGGFIAATLADFVQGCIMVIGV
LLMVFFLGSNPEVGGFSGMLSNLSSIDPMLVTPINEASFIPIMGLALLTSIGSWGLPQMI
HKFYTIKSEKAAVSAKWVSTAFAFIITFGAAYIGTVSRLFYPDAASKAAAGLTSPDMIVP
KIMEIALPDWVAALILVLVISASMSTLASLVLASSSVVSIDFVKGRLKTDLSDKNTMILM
RLLCVLFVVLSFILAIVPNSYVLSLMALSWGLVSGCLLAPYFLGLYWKRTTKEGVWAGIT
SALAIMLGGAYYFGINSVYMPAVGSLAMIAPIFVVMAVSLITKPFEREHIDYIFNKK