Protein Info for MMP_RS00855 in Methanococcus maripaludis S2

Annotation: DUF367 family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 171 PF04068: RLI" amino acids 1 to 32 (32 residues), 45 bits, see alignment 6.8e-16 PF04034: Ribo_biogen_C" amino acids 41 to 164 (124 residues), 155.9 bits, see alignment E=4.5e-50

Best Hits

Swiss-Prot: 60% identical to TSR3_METJA: Probable ribosome biogenesis protein MJ0708 (MJ0708) from Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)

KEGG orthology group: K09140, pre-rRNA-processing protein TSR3 (inferred from 100% identity to mmp:MMP0150)

Predicted SEED Role

"Ribosome biogenesis protein TSR3"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (archaea)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q6M0W8 at UniProt or InterPro

Protein Sequence (171 amino acids)

>MMP_RS00855 DUF367 family protein (Methanococcus maripaludis S2)
MKLFIYHEKQCDPKRCTALKMGRLGYAKIITNPNKVPRNSLLLNPYSEKSVSVEDREIIE
KYGILGLDCSWKQAEIVFKKTNARNQRVLPFLIAGNPVNYGKPCKLTTLEAIVATLYIAN
YKNEAVSLLNGFKWGNTFIDVNKELLEQYCGKTSDEIIRIQNEILNNMRNR