Protein Info for MMP_RS00630 in Methanococcus maripaludis S2

Annotation: ECF transporter S component

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 186 transmembrane" amino acids 6 to 28 (23 residues), see Phobius details amino acids 40 to 64 (25 residues), see Phobius details amino acids 70 to 89 (20 residues), see Phobius details amino acids 99 to 122 (24 residues), see Phobius details amino acids 148 to 170 (23 residues), see Phobius details PF12822: ECF_trnsprt" amino acids 7 to 169 (163 residues), 47.6 bits, see alignment E=2e-16 PF07155: ECF-ribofla_trS" amino acids 8 to 171 (164 residues), 33.5 bits, see alignment E=4.4e-12

Best Hits

KEGG orthology group: None (inferred from 100% identity to mmp:MMP0106)

Predicted SEED Role

"Substrate-specific component STY3230 of queuosine-regulated ECF transporter" in subsystem ECF class transporters or Queuosine-Archaeosine Biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (archaea)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q6M112 at UniProt or InterPro

Protein Sequence (186 amino acids)

>MMP_RS00630 ECF transporter S component (Methanococcus maripaludis S2)
MDKKVLYMTTIPVGIAINAIGGQIATFLKLPIFLDSIGTVLSGFLLGPVGGALVGFFTNI
LLGFILDPSYIPFSIVNIVIGLVSGYVAVKHGITLKNSVIVGLVLAIIAPMVGTPIAVYL
YGGLVGGGVDLLTAVFLHSGQDIFSSAFLARIPANLVDKLLSCILVYYIIKPFPKDILSE
LGVKVN