Protein Info for MMP_RS00120 in Methanococcus maripaludis S2

Annotation: LysR family transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 280 PF00126: HTH_1" amino acids 26 to 82 (57 residues), 33.3 bits, see alignment E=1.9e-12

Best Hits

KEGG orthology group: None (inferred from 100% identity to mmp:MMP0018)

Predicted SEED Role

"Transcriptional regulator, LysR Family Member"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (archaea)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See Q6M199 at UniProt or InterPro

Protein Sequence (280 amino acids)

>MMP_RS00120 LysR family transcriptional regulator (Methanococcus maripaludis S2)
VNKLSESDLSVTLNINYRGKQITKTQVEILKSVSETRSQNRTAEILGIPPSTVNIQIKRL
ENKLDLKLTFSSPAGTMLSPDAERIVSYYNAYLERTSKEKFIACGFISGEVGRILFDDVL
VSSFSNVLRLHRSNLTSVVGIDDPYWSYRLGDPVPVAFDHFVMVSKGDFDFKNLLGVNYS
AHRIVWKTLKNEKIDFKVSKVVKNPFYAIDLLEEGYSMFLNTCLLRYVKKDYLIKTPDYY
DKTKHTINFILNKSIPEDEFEEILYKKEKEIKLAGFDPLL