Protein Info for MMJJ_RS08730 in Methanococcus maripaludis JJ

Annotation: glycosyltransferase family 4 protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 354 transmembrane" amino acids 107 to 128 (22 residues), see Phobius details PF00534: Glycos_transf_1" amino acids 166 to 325 (160 residues), 51.8 bits, see alignment E=1.1e-17 PF13692: Glyco_trans_1_4" amino acids 179 to 312 (134 residues), 52.4 bits, see alignment E=1.1e-17 PF13524: Glyco_trans_1_2" amino acids 264 to 333 (70 residues), 29.7 bits, see alignment E=8.9e-11

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (archaea)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (354 amino acids)

>MMJJ_RS08730 glycosyltransferase family 4 protein (Methanococcus maripaludis JJ)
MGKIYYYLKKDLNTFEGKDKISGEVYNYLKKYYSNLEIFDEFSISYGDDDIIHINSSGIL
DSIKYGKMNKNLKIYSLYSNLKANPITLLRDSIDFFKLKDKNLKISLFYLFKRRSFPIFL
SLIPWFLIKKILGQNEVLILPNKYLYKNLNIKTAKIIPIGIDAVKFHKKNIEKNSKITVA
YAGHPAVDKGIIEVLKIFSRLDSTKFRKVLFLTNLNINLDYLKKIDPSVEIFGPQKDIVD
TYNSIDILILPYRHEISSIASPLVLIEAMACEVPVITSDLPHVKEIGGEILQYVKPFDIS
DFVKKVSDLANNPEKRLEMGKKSRNIVLEYYDEKETLMKYMKIYDTVIKRDQNE