Protein Info for MMJJ_RS06985 in Methanococcus maripaludis JJ

Annotation: 50S ribosomal protein L11

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 159 PF03946: Ribosomal_L11_N" amino acids 6 to 63 (58 residues), 86.1 bits, see alignment E=1e-28 PF00298: Ribosomal_L11" amino acids 70 to 137 (68 residues), 87.7 bits, see alignment E=5.6e-29

Best Hits

Swiss-Prot: 100% identical to RL11_METMP: 50S ribosomal protein L11 (rpl11) from Methanococcus maripaludis (strain S2 / LL)

KEGG orthology group: K02867, large subunit ribosomal protein L11 (inferred from 100% identity to mmp:MMP1433)

MetaCyc: 36% identical to 50S ribosomal subunit protein L11 (Escherichia coli K-12 substr. MG1655)

Predicted SEED Role

"LSU ribosomal protein L12e (L11p)" in subsystem Ribosome LSU eukaryotic and archaeal

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (archaea)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (159 amino acids)

>MMJJ_RS06985 50S ribosomal protein L11 (Methanococcus maripaludis JJ)
MAEQVVEILVSGGKATAGPPLGPAIGPLGVNIMQVVQKINNMTKDYEGMSVPVKVIVDTD
KRTFEVEVGIPPASALIKKEIGIEKGSQEPKHQVAGNITMEQIVKIAKMKQDAMLAYNLK
NASKEVVGTCVSVGISVEGMTPSEAQKAIDAGQFDSYFN