Protein Info for MMJJ_RS06425 in Methanococcus maripaludis JJ

Annotation: 50S ribosomal protein L3

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 334 PF00297: Ribosomal_L3" amino acids 4 to 333 (330 residues), 314.2 bits, see alignment E=6e-98 TIGR03626: ribosomal protein uL3" amino acids 6 to 331 (326 residues), 474.8 bits, see alignment E=5.7e-147

Best Hits

Swiss-Prot: 100% identical to RL3_METMP: 50S ribosomal protein L3 (rpl3) from Methanococcus maripaludis (strain S2 / LL)

KEGG orthology group: K02906, large subunit ribosomal protein L3 (inferred from 100% identity to mmp:MMP1543)

Predicted SEED Role

"LSU ribosomal protein L3e (L3p)" in subsystem Ribosome LSU eukaryotic and archaeal

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (archaea)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (334 amino acids)

>MMJJ_RS06425 50S ribosomal protein L3 (Methanococcus maripaludis JJ)
MGMKKNRPRRGSLAFSPRKRAKKLVPKIRSWPADKKVGLQAFPVYKAGTTHALLIENNPK
SPNSSQEVFTPVTVLETPDVTVAGIRLYEKTTKGLKALTEVWAEQLDSDLGRKLTLAKKE
EKKTVDALDAVLEKATEVRAIVHTNPKTTGIPKKKPEVVEIRIGGSSVAERLAYAKEILG
KTLAISDVFEAGEIIDTLAITKGKGFQGSVKRWGIKVQFGKHQRKGVGRHTGSIGPWRPR
RVMWTVPLPGQMGFHQRTEYNKRILKLGSEGAEITPKGGFLNYGAVKNGYVVVKGTVQGP
AKRLVVLRGSVRAAEDKFGLPEIAYISTESKQGN