Protein Info for MMJJ_RS06410 in Methanococcus maripaludis JJ

Annotation: 50S ribosomal protein L2

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 240 PF00181: Ribosomal_L2" amino acids 11 to 85 (75 residues), 76.8 bits, see alignment E=1.1e-25 PF03947: Ribosomal_L2_C" amino acids 93 to 220 (128 residues), 152 bits, see alignment E=8.4e-49

Best Hits

Swiss-Prot: 100% identical to RL2_METMP: 50S ribosomal protein L2 (rpl2) from Methanococcus maripaludis (strain S2 / LL)

KEGG orthology group: K02886, large subunit ribosomal protein L2 (inferred from 100% identity to mmp:MMP1546)

Predicted SEED Role

"LSU ribosomal protein L8e (L2p)" in subsystem Ribosome LSU eukaryotic and archaeal

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (archaea)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (240 amino acids)

>MMJJ_RS06410 50S ribosomal protein L2 (Methanococcus maripaludis JJ)
MGKRLISQNRGRGTPKYRSPTHKRKGAVKYRSYDEMEKDGKILGTVIDILHDPGRSAPVA
KVKFANDEERLVLIPEGIQVGEEIECGISAEIKPGNVLPLGEIPEGIPVYNIETIPGDGG
KLVRSGGCYAHVISHDVGKTIVRLPSGFSKVLNPACRATVGVVAGGGRKEKPFVKAGKKY
HSLSAKAVAWPKVRGVAMNAVDHPYGGGRHQHIGKPSSVSRHTSPGRKVGHIASRRTGKR