Protein Info for MMJJ_RS05710 in Methanococcus maripaludis JJ

Annotation: single-stranded-DNA-specific exonuclease RecJ

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 467 PF01368: DHH" amino acids 21 to 143 (123 residues), 44.2 bits, see alignment E=2.3e-15 PF02272: DHHA1" amino acids 352 to 465 (114 residues), 54.1 bits, see alignment E=2.3e-18

Best Hits

Swiss-Prot: 60% identical to RECJ_METJA: Single-stranded-DNA-specific exonuclease RecJ (recJ) from Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)

KEGG orthology group: K07463, archaea-specific RecJ-like exonuclease (inferred from 99% identity to mmp:MMP1682)

Predicted SEED Role

"Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-)" in subsystem DNA-replication or DNA Repair Base Excision or DNA repair, bacterial RecFOR pathway (EC 3.1.-.-)

Isozymes

Compare fitness of predicted isozymes for: 3.1.-.-

Use Curated BLAST to search for 3.1.-.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (archaea)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (467 amino acids)

>MMJJ_RS05710 single-stranded-DNA-specific exonuclease RecJ (Methanococcus maripaludis JJ)
MEYLLNLKKAVKILRKNRDKKILVCTHIDTDGINSRIILENVLERLNIEAEFLFLRQIDY
GTIDTIPFDNDLIIFADLGSGQIDLINEKLKETSKKPKIIILDHHIVSNEKIPENIVNVN
PHNDGIDGGKEICGAGVCYLFAKICDPRFTDLAKYAVLGAVGDVQSLEGNLIGLNRDVIL
RDAVKAGDISVSPDLQFYGKHTRPLFTSIKYFTDVRTDLTDNDSRIINFINNVNRKHGTD
IIPKDYLCDLTFDQKKIMGSEFLHKCSRYIPPAWRIHLPKVIFGESYELTNEEFKSNLKN
LEEFSTCINGCSRYDEYDVPLEVLKGDRDKNYSKMLKMLKKHKRNLAGSMNFLRNDVEIV
QKENFQYFKVDKNAIKGNIVGIVAGMSYSLEKVDWKKPIFAVSEMDDGYKVSARCPKLLS
FAEDINLASAINYASKKVGGSGGGHKFACGAYIPEIGDFVKYLEEKL