Protein Info for MMJJ_RS05505 in Methanococcus maripaludis JJ

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 884 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 98% identity to mmp:MMP1719)

Predicted SEED Role

"Uncharacterized protein MJ0903"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (archaea)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (884 amino acids)

>MMJJ_RS05505 hypothetical protein (Methanococcus maripaludis JJ)
MQKKLIFVLILLFTVSVNYAEDDEGISIYKIWSVGDNPDSSEIYIDPSTPVIYVGLVNND
PYQRNVRVTASYEENDFESAILPLSPNTHYEKIVEIRLEFDEVGEHDVDISLIDENGKEV
DSEQITVNVVSPIDVKNVTCQDSYVSDSNKNLEVVNSNWFTVTLESNYRAQTDYEVKTWI
SVVSTDYDGDTNEDIENEDIYYNGKDDLKVVYVSYRSEKEVSFNIPEITADNDEFKIQVH
TEIMGLHDYTNDLEETEMVKDTGIISYNYKKTAKTYQFPIHVASYSLFNNINGSNSEMVN
DYYQSSKIYDKTIENALNAKFESKNVLPRAYVEDDPYLSFLKVNLENRYDDDQTATVIIE
SSSGCLSKKTIKIDENDVDTLYIPFISRLVDDGEFNIIVYSNKYYLYNSEEDVDIDPEIV
SPVQIYNISYPVDSSAALASSNSGCVFVGKNYTMNVTLKNNYNRTLTGKLYVGDHYDEDN
SYESGVFETTEPITFKLSPKEKNTYSIDLKFNREVNGLIEVVVDTNGAAVDEDDDIAGYS
TMVHFDAYNILDIRKVWYNNTILPKIATINENGGLFLNYPLAGFNNSCAVSFESMVSDDI
TYKMWVEVYDSNGNLKATSDKKNVLVKAKSTSGNLKTADFDIFFEEGFIGYTLFHAVPLN
DFEDVDIFYTEGSGTVSKDINPLTPVGRYSSIDLLSSIPTSTNKVTEVVAPIKIDDMVYT
ENNLNVVISSGLSSIYPVNLTYFYRITISNDNKIIYKSPIYKDIIHSTESKPLKIKLGDV
DGETYDIVFEVEIPDFAMESGTYHSMILKKYLTIANNQEIITQEENSEPETYVEPKTEVE
NTGENSDLENQSATEEENRGIIGNILDTVSSIASNIPIIRNFVY