Protein Info for MMJJ_RS03960 in Methanococcus maripaludis JJ

Annotation: DUF2067 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 205 PF09840: DUF2067" amino acids 10 to 198 (189 residues), 172.1 bits, see alignment E=5e-55

Best Hits

Swiss-Prot: 82% identical to Y1275_METVS: Uncharacterized protein Mevan_1275 (Mevan_1275) from Methanococcus vannielii (strain ATCC 35089 / DSM 1224 / JCM 13029 / OCM 148 / SB)

KEGG orthology group: K09742, hypothetical protein (inferred from 100% identity to mmp:MMP0262)

Predicted SEED Role

"Uncharacterized protein MJ0388"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (archaea)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (205 amino acids)

>MMJJ_RS03960 DUF2067 domain-containing protein (Methanococcus maripaludis JJ)
MKRIISIKGTEEEIIEICERISKLGIDYSFDAKANYAENRAYNSARIKIFGDEKYKLVED
HKNILTIIDTVHNKYNADTKGLFEYKLNDLKYPVNKDLVLDTLSALKINFKYLKDENVIK
CERKIEEINSILKDILDIYSELNFYNIGSKPVKNVLTLAVYITGRDIDELIEEGLEKELF
REEDEKIVLNKDINLTRKELLSVKK