Protein Info for MMJJ_RS02105 in Methanococcus maripaludis JJ

Annotation: right-handed parallel beta-helix repeat-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1050 signal peptide" amino acids 1 to 15 (15 residues), see Phobius details PF13229: Beta_helix" amino acids 74 to 228 (155 residues), 30.5 bits, see alignment E=2.8e-11 PF05048: NosD" amino acids 217 to 424 (208 residues), 42.4 bits, see alignment E=5.7e-15 amino acids 588 to 836 (249 residues), 24.5 bits, see alignment E=1.7e-09

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (archaea)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1050 amino acids)

>MMJJ_RS02105 right-handed parallel beta-helix repeat-containing protein (Methanococcus maripaludis JJ)
MLTILISFIGFVSAETVPIDYNINNSNYDTAKMISEPGIYNLTEDITNLGGIEINSDNVT
LNGQGYFLNVTSNNGIQASGHKNITITNVNLYASGENASAINITGADITIFANTISSNIG
DGICINENSENITISGNTITAGYNGIEIDGNNSVITGNTITNLLNYWGISIGANNCLVAN
NVINSNYSINMDGYNLTVENNALTSGIHCYYVSIYSNTLSGNTINGKKLYFYKNMENIGE
IPSDAGQVILVNCTNAQISNINFNEKAIAISIADSTGVFVENCTINPNIIYENYVSIYNS
ENCEFTGNTFKVSESSLVYGISALDVDNITISKNKFEGIAVPGYGVNFTNSRIFKNIFEN
VSLAPLAFDYNCSGTYVYLNNFINCSWNRGINESITLNSPLNVSYTYNGTTYSTIAGNYW
SDYNETNANVNEGIWSIPYIITDSVNDSYPLAKPFSMVDENGIIHITLDDVDSENGYVIT
KPGTYVLDENITNGGSILIDSSNVTFDGNGHFITNSESYAVYSNTEMFENVTVKNVITLS
SIYIKASNSNVSSNTAYNVEINGNYNTISSNIVKSTMYVNRYFPWGLNNTISNNTAYLIL
YWGYDSKIYSNAVDYALASYGNNNNISSNVIGSESTHGDNSIESYGDNNSISSNNVDYMI
YLKGNYNTISSNIVQDHISAGGGYNTISSNIVQDHIWTRGQYTLISSNTVINASYYAIDP
NGDYDYGIDAYATVFNNTVLASKVGIWLDNYCEGYSNITQNTVYADDYPIIIGDNITGCN
IYLNNFIHTGNSTDISGIMPNTTVNNSLVSPFEIEYNYNGNTYSNILGNYWSDYSGTDTD
GNGIGDTYYIYGCDYERTYGEDYYDIDYLENDTAPLIDMWNGNEIGNYVATSRSSGGSGG
RSYDSDISDEIESKVIKNFVSSASVIYGNEIDQQYAEELREKIQNANGYKISGNAVIVGG
PLSNGFAREYNDQFEMPISNDYPGENKGIIQVLKVQDNTGKIVQSYTIVYIAGSDRLGTQ
AALEYFKTLDELPEGPIMVEWTENGHKVVE