Protein Info for MMJJ_RS01870 in Methanococcus maripaludis JJ

Annotation: methanogenesis marker 15 protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 411 transmembrane" amino acids 390 to 408 (19 residues), see Phobius details TIGR03286: putative methanogenesis marker protein 15" amino acids 3 to 406 (404 residues), 732.3 bits, see alignment E=1.5e-224 TIGR00241: putative CoA-substrate-specific enzyme activase" amino acids 147 to 402 (256 residues), 339.7 bits, see alignment E=1.1e-105 PF01869: BcrAD_BadFG" amino acids 149 to 402 (254 residues), 259.6 bits, see alignment E=1.9e-81

Best Hits

Swiss-Prot: 81% identical to Y800_METJA: Uncharacterized protein MJ0800 (MJ0800) from Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)

KEGG orthology group: None (inferred from 100% identity to mmp:MMP0608)

Predicted SEED Role

"Uncharacterized protein MJ0800"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (archaea)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (411 amino acids)

>MMJJ_RS01870 methanogenesis marker 15 protein (Methanococcus maripaludis JJ)
MAVKIAELTCGAEYSGVQAEIEKAAKEVGGELIYPEVDLEYIDKVNDYLGFEVASANLKL
MFARAMSIIEGNTDAEAVFISTCFRCAEGALVRNEVRRLIQQNTDLPVVMYSFTERTKAS
ELLTRMEALVTIVDKKALLARKKQDGISLGLDSGSTTTKAVIMKNNEVVGTGWVYTKDVI
ESAQEALDAALKESGLKMEDIETIGTTGYGRHTLGDHYKADLVQEELTVNSKGAAFLAGA
QKGEATVIDIGGMDNKAISLNNAIPDGFTMGGICAGASGRFFEITARRLGVSIQELGDIA
ATGDWRNVMMNSYCIVFGIQDLVTGLAGGATPNDVAAAAAHSVAEQIYEQQLQEVDVRDP
LILVGGSSLLKGMVLALEEILGKKIIVPKYSQYIGAVGAALISSGYRNLKK