Protein Info for MMJJ_RS01735 in Methanococcus maripaludis JJ

Annotation: rubrerythrin family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 196 PF02915: Rubrerythrin" amino acids 9 to 143 (135 residues), 125.5 bits, see alignment E=3.1e-40 PF00210: Ferritin" amino acids 10 to 148 (139 residues), 36.6 bits, see alignment E=6.4e-13 PF21349: RUBY_RBDX" amino acids 161 to 190 (30 residues), 41.4 bits, see alignment 1.1e-14

Best Hits

Swiss-Prot: 58% identical to RUBY_METJA: Putative rubrerythrin (MJ0734) from Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)

KEGG orthology group: None (inferred from 97% identity to mmp:MMP0633)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (archaea)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (196 amino acids)

>MMJJ_RS01735 rubrerythrin family protein (Methanococcus maripaludis JJ)
MNVLQKTMENLSKAFIGESQARNRYTIYAKIAQKEGYEKIAEIFTMTAEQEREHAKWLFK
LINSLKKDNEPAEILIDGAAVPTAYKTTVENLKAAASGENYEHTEMYPEFAKIAKEEGLA
EISDRLLAIAEAEKHHEQRYQKLIAQLENGSMFKKGEEIYWTCRKCGYLVKGKDAPVECP
SCGHPTAYFEKQCEEY