Protein Info for MMJJ_RS01045 in Methanococcus maripaludis JJ

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 407 transmembrane" amino acids 21 to 41 (21 residues), see Phobius details amino acids 273 to 302 (30 residues), see Phobius details amino acids 323 to 353 (31 residues), see Phobius details amino acids 368 to 392 (25 residues), see Phobius details PF12704: MacB_PCD" amino acids 21 to 241 (221 residues), 107.1 bits, see alignment E=1.6e-34 PF02687: FtsX" amino acids 281 to 400 (120 residues), 74.6 bits, see alignment E=7.3e-25

Best Hits

KEGG orthology group: K02004, (no description) (inferred from 53% identity to mvo:Mvol_1174)

Predicted SEED Role

"Cell division protein FtsX" in subsystem Bacterial Cell Division

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (archaea)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (407 amino acids)

>MMJJ_RS01045 ABC transporter permease (Methanococcus maripaludis JJ)
MKPSKIFKLAFNMVKGSKLRSWITIIGVVVAVASVITIISAGELMEKQVTHELEKLGGDV
ISVYAITTETSSKTPELTKTDVLVIKGIPSVKYVDKRVTSYSKISYGDKELYSQITGVDP
AVWPKITQEKVETGRMLQPGDKNVVVINNYLANEEFNRKININQIIKIGNKSFRVIGILD
NDSSGLASLFSGGIYAPLDSVYDIEQDSDYSVPKERGTYDSLEIKLKENVDTDAAVQDIE
QKLRTSRHVTEKNQDFYISSAKSFIESSQSIIGGITLFLSFIAGISLIVGAFGISNTMFT
AVLEKTKEIGIMKAIGAKNEDILLLFLFNSGLIGLAGGFLGLLIGVLITQVITYVIALKF
GTPFEFYVSIKSVVVALVVSIGAGILAGAVPAYNASKLKPVDALRSE